The next PGR seminar is taking place this Friday 14th March at 2PM in JC 1.33a

Below are the Title and Abstract for Mirza’s talk – Please do come along if you are able.

Title: BioFuse: Optimizing Biomedical Embeddings with Foundation Models

Abstract: Pre-trained foundation models have revolutionized biomedical AI, excelling in specialized domains like radiology and histopathology. However, integrating multiple models remains a challenge due to compatibility and feature fusion issues. BioFuse is an open-source framework designed to optimize biomedical embeddings by automatically selecting and fusing the best model combinations. Leveraging 9 state-of-the-art foundation models and a grid search strategy, BioFuse generates task-specific embeddings that improve downstream classification. On the MedMNIST+ benchmark, it achieves SOTA AUC in 5/12 datasets while maintaining near-SOTA performance in others. Surprisingly, our experiments reveal strong cross-modal capabilities, where models trained on one modality perform well on others. With a high-level API and an extensible architecture, BioFuse streamlines model integration and paves the way for new insights in biomedical data fusion.