Job vacancies: Interdisciplinary Data Scientists

The Schools of Medicine and Computer Science are seeking to appoint three highly motivated data scientists with a passion for computer vision and deep learning, and specifically their application to medical imaging. The data scientists will be based in the Schools of Computer Science and Medicine at the University of St Andrews and will work on a national Innovate UK funded initiative to create a pan Scotland Industrial Centre for AI Research in Digital Diagnostics (iCAIRD).

The successful candidates will have the opportunity to work alongside and learn from clinicians, industrial experts from Philips Healthcare and academics to help develop artificial intelligence solutions for the automatic reporting of cancer diagnoses in endometrial and cervical cancer. The main duties of the role will involve being an active member of an interdisciplinary team of scientists to help develop deep learning algorithms, within industry standard guidelines, to analyse patient samples in a manner that allows rapid clinical transfer. This work will therefore have the opportunity to impact both patient welfare and relieve pathologist work burden.

Applicants should have experience in machine learning, demonstrable experience in computer programming languages and an interest in the medical applications of computer science. The candidates would benefit from a track record in scientific writing and working in interdisciplinary teams as well as experience in computer vision.

The posts are full time and over a period of 36 months.
Closing Date: 18 January 2019

Find out more about the vacancies further particulars on the recruitment website.

PhD viva success: Shyam Reyal

Congratulations to Shyam Reyal, who successfully defended his thesis yesterday. He is pictured with Internal examiner Dr Tom Kelsey and external examiner Dr Mark Dunlop , from the University of Strathclyde. Shyam’s research was supervised by Dr Per Ola Kristensson and Dr Mark-Jan Nederhof.

Image courtesy of Annemarie Paton

PhD viva success: Julian Petford

Congratulations to Julian Petford, who successfully defended his thesis today. He is pictured with internal examiner Professor Aaron Quigley and external examiner Dr Jason Alexander, from Lancaster University. Julian’s PhD research in Full Coverage Displays for Non-Immersive Applications was supervised by Dr Miguel Nacenta.

Image courtesy of Wendy Boyter

Dr Roy Dyckhoff: A Eulogy

A Service of Thanksgiving was held at St Salvator’s Chapel on Saturday in memory of Roy Dyckhoff who died in hospital in September. The service included a eulogy composed and delivered by Head of School Professor Simon Dobson.

Since his death I’ve been fascinated to hear how others saw Roy — and how their views differed noticeably from what I saw in him. My perception was of a mathematician who’d made his home in computer science, at the computational end of our shared disciplines: someone fascinated by notions of proof as applied to computation, with a far broader and deeper mathematical knowledge than most of his colleagues and an ability to point out links between the practical and the theoretical. But in recent months I’ve learned of many different Roys: the one who moved from topology to category theory in his PhD; the one who worked on proof theory; the one who was a mainstay of computational logic in the UK; the one who rang bells here in our beautiful chapel; who climbed mountains; who studied languages — and probably many others that I’ll learn more of over the course of today.

Roy started at programming early: a one-year job with punched cards before going up to Cambridge as a maths undergraduate. And while doing his degree he spent his second year — when for some reason he had no maths exams — attending all the lectures, tutorials, and seminars for a degree in Persian. (As one does.) Perhaps this should have been a hint there that maths was only ever going to be a part of his intellectual career; or perhaps it was an early signature of an individual with exceptionally wide-ranging interests, who would constantly return to pure maths from lengthy diversions into other subjects. One look at the bookshelves of his house in St Andrews tells you this — volumes on renaissance art, arts and crafts, world history, and early music sitting alongside the algebra and number theory. It’s interesting also to look at theses of his nine PhD students, interesting how many of them sit at interfaces: between proof theory and category theory, between logic and search, between logic programming, functional programming, and type theory.

But such a broad base of interests sat on a bedrock of fascination for precision — indeed, a demand for precision, and an irritation that other people and organisations seemed so unreasonably comfortable with anything less than precise approaches to subjects. We saw this clearly in Roy’s (repeated) attempts to translate some or other aspect of the university’s regulations into first-order logic — an activity with which he persisted in the face of almost complete bafflement on the part of those to whom he addressed his memoranda. “Let S be the set of all students, and consider a set M of modules operated on by a collection of groups G-sub-i such that…” and so on. I’ve sometimes wondered how those on the receiving end felt about this mathematician’s take on their job — or indeed whether Roy himself imagined the university’s administration to be populated entirely by frustrated logicians, trapped in an imprecise world of programme requirements and module anti-requisites, and as anxious as him to re-write the rules with precision.

Given all this, I think it’s hard to assess what Roy’s influence has been, since it’s been spread over so many disparate areas — and that’s probably a good thing. “Activity is the enemy of thought,” as Christopher Strachey once observed, and the attempt to measure and quantify thought isn’t far behind. It’s not bad in itself, but we now know it breeds a narrow specialisation that over-values increasingly deep looks at increasingly tiny areas of knowledge, and systematically under-values those who want, and feel able, to contribute more widely — as Roy did. If there’s anything to take away from his career, I think it would be this, an example of scholarship that is at once broad, deep, intellectually honest, and constantly curious.

For those who’d like to mark his passing in some way, the family have suggested giving blood as a suitable marker. Alternatively, they are collecting for the Scottish Mountain Bothies Association, which was a charity he supported for many years. https://mydonate.bt.com/fundraisers/roydyckhoff

Distinguished Speaker Program Tour (Indonesia): Professor Aaron Quigley

Professor Quigley will engage in a lecture tour to three cities in Indonesia in March 2019 as part of the Distinguished Speaker Program (DSP) of the Association for Computing Machinery (ACM). The DSP brings together international thought leaders from academia, industry, and government.

Professor Quigley will speak at the 5th International HCI and UX Conference which will travel to Jakarta, Surabaya and Denpasar. He will present talks on Discreet Computing and Global Human Computer Interaction along with meeting with local academic and industry leaders in Human Computer Interaction. Professor Quigley will be on sabbatical in the National University of Singapore next year.

St Andrews Research Open-day in Computer Science

Register for St Andrews ROCS HERE for free.

St Andrews ROCS is an event for those of you who engage (or are planning to engage) with research in the School of Computer Science at the University of St Andrews.

The main audiences are prospective postgraduate students, prospective or current industrial collaborators, and colleagues from other disciplines or Schools in Scotland and beyond.

The event will take place Friday October 26th 2018, between 10:00 AM and 4 PM.

There will be talks from all research groups, posters, demonstrations, guided tours, and much more.

You can learn about how to become a St Andrews PhD student or an active industrial collaborator.

The event will take place in the JACK COLE BUILDING, NORTH HAUGH, UNIVERSITY OF ST ANDREWS, ST ANDREWS, KY16 9SX, SCOTLAND.

You can download the programme of activities.

If you have any questions, e-mail dopgr-cs@st-andrews.ac.uk.

Register for St Andrews ROCS HERE for free.

Event details

  • When: 26th October 2018 10:00 - 16:00
  • Where: School of Computer Science
  • Format: Conference, Symposium, Visiting Day

Bridging the Gap between Formal Argumentation and Actual Human Reasoning

Later this week Dr Alice Toniolo will be an invited speaker at “Bridging the Gap between Formal Argumentation and Actual Human Reasoning” taking place at the Institute for Philosophy II, Ruhr-Universität Bochum. Her talk will focus on argumentation-based support for human sensemaking of conflicting information. See abstract below for more information.

Abstract: Models of argumentation have increasingly been employed in human decision-making systems to facilitate good reasoning. Sensemaking of conflicting and incomplete information is one application where argumentation-based tools have the potential to help users reduce the cognitive load in identifying hypotheses about a situation. To improve the effectiveness of systems that employ computational models of argumentation, however, there is a real need to evaluate their use in human decision support. In this talk, we seek to better understand the link between human reasoning, argumentation schemes and preferred extensions in supporting sensemaking of conflicting information. An application will be presented in the context of intelligence analysis which employs argumentation schemes to construct hypotheses about the world and counteract cognitive biases. Preferred extensions are linked to different possible world explanations and help analysts reduce the cognitive effort in identifying what is coherent in a situation. However, using argumentation-based tools to support reasoning about the world opens questions on how people engage with and understand these approaches. A set of experiments with human participants is presented to investigate the use of argumentation schemes and preferred extensions in identifying plausible explanations. Initial results show that argumentation schemes are a reliable method to structure inferences and draw plausible conclusions from incomplete information with potential for supporting the identification of biases. On the other hand, preferred extensions can be seen as capturing different possible world explanations affecting the degree of believability of a conclusion. Results from the experiments show that the degree of believability of a conclusion may be associated with the number of preferred extensions in which the conclusion is credulously accepted with similar heuristics as those employed in understanding probabilities.