Rob Stewart (Heriot-Watt University): Reliable Parallel Computing using Model Checking

Abstract:

This talk will demonstrate how model checking based verification of compilers and runtime systems can increase the confidence of parallel execution of programming languages, using two case studies.

As HPC systems continue to increase in scale, their mean time between failure decreases meaning reliability has become a major concern. I will present HdpH-RS, a parallel HPC language. HdpH-RS has a formal semantics, and a fault tolerant work stealing scheduler that has been verified with the SPIN model checker. At embedded scale, program transformations on stateful dynamic code can introduce bugs, race conditions and deadlock. I will present a parallel refactoring tool for the CAL dataflow language. It is integrated with the TINA model checker that we use to identify parallelisable cyclo-static actors in dynamic dataflow programs.

The broader aim of this work is to integrate automated formal verification into parallelising compilers and parallel runtime systems for heterogeneous architectures.

Speaker bio: Dr Rob Stewart is an Assistant Professor at Heriot-Watt University. He’s interested in formalising, verifying and implementing dataflow, functional and domain specific programming languages for manycore architectures and programmable hardware.

Event details

  • When: 19th November 2019 14:00 - 15:00
  • Where: Cole 1.33b
  • Series: School Seminar Series
  • Format: Seminar

Bran Knowles (Lancaster University): Understanding older adults’ distrust of digital technology

Abstract: It is well known that older adults continue to lag behind younger adults in terms of their breadth of uptake of digital technologies, amount and quality of engagement in these tools and ability to critically engage with the online world. Can these differences be explained by older adults’ distrust of digital technologies? Is trust, therefore, a critical design consideration for appealing to older adults? In this talk I will argue that while distrust is not, in fact, determinative of non-use and therefore does not explain these differences in tech usage, it is nonetheless key for designers to understand older adult distrust in developing socially responsible technologies.

Speaker Bio: Bran is a lecturer in the Data Science Institute at Lancaster University. Her research explores the social impacts of computing, with a particular interest in trust, privacy, and ethics. Her recent work has explored these issues at both ends of the age spectrum, with projects such as IoT4Kids, looking at the privacy, security and ethical issues of enabling children to programme IoT devices; and Mobile Age, looking at developing mobile apps for older adults. Bran currently serves as a member of the ACM Europe Technology Policy Committee.

Event details

  • When: 12th November 2019 14:00 - 15:00
  • Where: Cole 1.33b
  • Series: School Seminar Series
  • Format: Seminar

Jan De Muijnck-Hughes (University of Glasgow): LightClick: A Linear Typed Orchestration Language for System-On-A-Chip Designs

Abstract:

Two important aspects in hardware design are the safe routing of signals between modules, and ensuring that ports are correctly connected. Well-known hardware description languages such as SystemVerilog, provide nominal checking over these aspects. Thus, leaving correctness checks over module orchestration to be performed post-design-time using static analyses, testing, and during synthesis.

Using a mixture of dependent and quantitative typing, we can lift external correctness checks over module connections directly into the type-system. With this approach we can detect more errors at design time, enhance the safety of our hardware designs, and thus increase design productivity.

In this talk I will introduce and discuss LightClick, an orchestration language for hardware design that exemplifies our approach. LightClick uses quantitative typing to ensure linear usage of ports, and dependent types to ensure that port compatibility is a decidable compile-time check. I will show how LightClick can be used to model simple hardware designs, how SystemVerilog stubs are generated from designs using staged interpretation.

Speaker Bio: Jan is a Research Associate at the University of Glasgow, who is interested in using state-of-the-art advances in programming language theory to build more trustworthy systems. Jan is currently involved in the Border Patrol project – a collaboration between the Universities of Heriot-Watt, Glasgow, and Imperial College London to explore how Dependent Typing and Session Typing can help make hardware design safer and secure.

Event details

  • When: 5th November 2019 14:00 - 15:00
  • Where: Cole 1.33b
  • Series: School Seminar Series
  • Format: Seminar

Max L. Wilson (University of Nottingham): Brain-based HCI – What could brain data can tell us HCI

Please note non-standard date and time for this talk

Abstract:

This talk will describe a range of our projects, utilising functional Near Infrared Spectroscopy (fNIRS) in HCI. As a portable alternative that’s more tolerate of motion artefacts than EEG, fNIRS measures the amount of oxygen in the brain, as e.g. mental workload creates demand. As opposed to BCI (trying to control systems with our brain), we focus on brain-based HCI, asking what brain data can tell us about our software, our work, our habits, and ourselves. In particular, we are driven by the idea that brain data can become personal data in the future.

Speaker Bio:

Dr Max L. Wilson is an Associate Professor in the Mixed Reality Lab in Computer Science at the University of Nottingham.  His research focus is on evaluating Mental Workload in HCI contexts – as real-world as possible – primarily using functional Near Infrared Spectroscopy (fNIRS).  As a highly tolerant form of brain sensor, fNIRS is suitable for use in HCI research into user interface design, work tasks, and everyday experiences.  This work emerged from his prior research into the design and evaluation of complex user interfaces for information interfaces. Across these two research areas, Max has over 120 publications, including a Honourable Mention CHI2019 paper on a Brain-Controlled Movie – The MOMENT.

Event details

  • When: 25th October 2019 14:00 - 15:00
  • Where: Cole 1.33b
  • Series: School Seminar Series
  • Format: Seminar

DLS: Multimodal human-computer interaction: past, present and future

Speaker: Stephen Brewster (University of Glasgow)
Venue: The Byre Theatre

Timetable:

9:30: Lecture 1: The past: what is multimodal interaction?
10:30 Coffee break
11:15 Lecture 2: The present: does it work in practice?
12:15 Lunch (not provided)
14:15 The future: Where next for multimodal interaction?

Speaker Bio:

Professor Brewster is a Professor of Human-Computer Interaction in the Department of Computing Science at the University of Glasgow, UK. His main research interest is in Multimodal Human-Computer Interaction, sound and haptics and gestures. He has done a lot of research into Earcons, a particular form of non-speech sounds.

He did his degree in Computer Science at the University of Herfordshire in the UK. After a period in industry he did his PhD in the Human-Computer Interaction Group at the University of York in the UK with Dr Alistair Edwards. The title of his thesis was “Providing a structured method for integrating non-speech audio into human-computer interfaces”. That is where he developed my interests in Earcons and non-speech sound.

After finishing his PhD he worked as a research fellow for the European Union as part of the European Research Consortium for Informatics and Mathematics (ERCIM). From September, 1994 – March, 1995 he worked at VTT Information Technology in Helsinki, Finland. He then worked at SINTEF DELAB in Trondheim, Norway.

Event details

  • When: 8th October 2019 09:30 - 15:15
  • Where: Byre Theatre
  • Series: Distinguished Lectures Series
  • Format: Distinguished lecture

Daniel S. Katz (University of Illinois): Parsl: Pervasive Parallel Programming in Python

Please note non-standard date and time for this talk

Abstract: High-level programming languages such as Python are increasingly used to provide intuitive interfaces to libraries written in lower-level languages and for assembling applications from various components. This migration towards orchestration rather than implementation, coupled with the growing need for parallel computing (e.g., due to big data and the end of Moore’s law), necessitates rethinking how parallelism is expressed in programs.

Here, we present Parsl, a parallel scripting library that augments Python with simple, scalable, and flexible constructs for encoding parallelism. These constructs allow Parsl to construct a dynamic dependency graph of components from a Python program enhanced with a small number of decorators that define the components to be executed asynchronously and in parallel, and then execute it efficiently on one or many processors. Parsl is designed for scalability, with an extensible set of executors tailored to different use cases, such as low-latency, high-throughput, or extreme-scale execution. We show, via experiments on the Blue Waters supercomputer, that Parsl executors can allow Python scripts to execute components with as little as 5 ms of overhead, scale to more than 250000 workers across more than 8000 nodes, and process upward of 1200 tasks per second.

Other Parsl features simplify the construction and execution of composite programs by supporting elastic provisioning and scaling of infrastructure, fault-tolerant execution, and integrated wide-area data management. We show that these capabilities satisfy the needs of many-task, interactive, online, and machine learning applications in fields such as biology, cosmology, and materials science.

Slides: see here.

Speaker Bio: Daniel S. Katz is Assistant Director for Scientific Software and Applications at the National Center for Supercomputing Applications (NCSA), and Research Associate Professor in Computer Science; Electrical & Computer Engineering; and the School of Information Sciences at the University of Illinois Urbana-Champaign. For further details, please see his website here.

Event details

  • When: 18th October 2019 13:00 - 14:00
  • Where: Cole 1.33b
  • Series: School Seminar Series
  • Format: Seminar

Ankush Jhalani (Bloomberg): Building Near Real-Time News Search

Abstract:

This talk provides an insight into the challenges involved in providing near real-time news search to Bloomberg customers. It starts with a picture of what’s involved in building such a backend, then delves into what makes up a search engine. Finally we discuss the challenges of scaling up for low-latency and high-load, and how we tackle them.

Speaker Bio:

Ankush leads the News Search infrastructure team at the Bloomberg Engineering office in London. After completing his Masters in Computer Science, he joined Bloomberg at their New York office in 2009. Later working from Washington DC, he led a team to build a web application leveraging Lucene/Elasticsearch for businesses to discover government contracting opportunities. In London, his team focuses on search infrastructure and services allowing clients to search news events from all over the globe with near real-time access and sub-second latencies.

 

Event details

  • When: 15th October 2019 14:00 - 15:00
  • Where: Cole 1.33a
  • Series: School Seminar Series
  • Format: Seminar

Software Carpentry Workshop

Registration is open for the next Software Carpentry workshop in St Andrews on September 23-24 in the Parliament Hall. We will teach UNIX shell, version control with Git and programming with Python. Please see the workshop page for further details and the link to registration via PDMS.

Event details

  • When: 23rd September 2019 - 24th September 2019
  • Where: Parliament Hall
  • Format: Workshop

MIP Modelling Made Manageable

Can a user write a good MIP model without understanding linearization? Modelling languages such as AMPL and AIMMS are being extended to support more features, with the goal of making MIP modelling easier. A big step is the incorporation of predicates, such a “cycle” which encapsulate MIP sub-models. This talk explores the impact of such predicates in the MiniZinc modelling language when it is used as a MIP front-end. It reports on the performance of the resulting models, and the features of MiniZinc that make this possible.

Professor Mark Wallace is Professor of Data Science & AI at Monash University, Australia. We gratefully acknowledge support from a SICSA Distinguished Visiting Fellowship which helped finance his visit.

Professor Wallace graduated from Oxford University in Mathematics and Philosophy. He worked for the UK computer company ICL for 21 years while completing a Masters degree in Artificial Intelligence at the University of London and a PhD sponsored by ICL at Southampton University. For his PhD, Professor Wallace designed a natural language processing system which ICL turned into a product. He moved to Imperial College in 2002, taking a Chair at Monash University in 2004.

His research interests span different techniques and algorithms for optimisation and their integration and application to solving complex resource planning and scheduling problems. He was a co-founder of the hybrid algorithms research area and is a leader in the research areas of Constraint Programming (CP) and hybrid techniques (CPAIOR). The outcomes of his research in these areas include practical applications in transport optimisation.

He is passionate about modelling and optimisation and the benefits they bring.  His focus both in industry and University has been on application-driven research and development, where industry funding is essential both to ensure research impact and to support sufficient research effort to build software systems that are robust enough for application developers to use.

He led the team that developed the ECLiPSe constraint programming platform, which was bought by Cisco Systems in 2004. Moving to Australia, he worked on a novel hybrid optimisation software platform called G12, and founded the company Opturion to commercialise it.  He also established the Monash-CTI Centre for optimisation in travel, transport and logistics.   He has developed solutions for major companies such as BA, RAC, CFA, and Qantas.  He is currently involved in the Alertness CRC, plant design for Woodside planning, optimisation for Melbourne Water, and work allocation for the Alfred hospital.

Event details

  • When: 19th June 2019 11:00 - 12:00
  • Where: Cole 1.33a
  • Series: AI Seminar Series
  • Format: Lecture, Seminar

St Andrews Bioinformatics Workshop 10/06/19

Next Monday is the annual St Andrews Bioinformatics workshop in Seminar Room 1, School of Medicine. Some of the presentations are very relevant to Computer Science, and all should be interesting. More information below:

Agenda:

14:00  – 14:15: Valeria MontanoThe PreNeolithic evolutionary history of human genetic resistance to Plasmodium falciparum

14:15 – 14:30: Chloe Hequet: Estimation of Polygenic Risk with Machine Learning

14:30 – 14:45: Roopam Gupta: Label-free optical hemogram of granulocytes enhanced by artificial neural networks

15:00 – 15:15: Damilola Oresegun: Nanopore: Research; then, now and the future

15:15 – 15:30: Xiao Zhang: Functional and population genomics of extremely rapid evolution in Hawaiian crickets

15:30 – 16:00: Networking with refreshments

16:00 – 17:00: Chris Ponting: The power of One: Single variants, single factors, single cells

You can register your interest in attending here.

Event details

  • When: 10th June 2019 14:00 - 17:00
  • Format: Lecture, Talk, Workshop